Package: wql 1.0.1

wql: Exploring Water Quality Monitoring Data

Functions to assist in the processing and exploration of data from environmental monitoring programs. The package name stands for "water quality" and reflects the original focus on time series data for physical and chemical properties of water, as well as the biota. Intended for programs that sample approximately monthly, quarterly or annually at discrete stations, a feature of many legacy data sets. Most of the functions should be useful for analysis of similar-frequency time series regardless of the subject matter.

Authors:Alan Jassby [aut], James Cloern [ctb], Jemma Stachelek [ctb, cre]

wql_1.0.1.tar.gz
wql_1.0.1.zip(r-4.5)wql_1.0.1.zip(r-4.4)wql_1.0.1.zip(r-4.3)
wql_1.0.1.tgz(r-4.4-any)wql_1.0.1.tgz(r-4.3-any)
wql_1.0.1.tar.gz(r-4.5-noble)wql_1.0.1.tar.gz(r-4.4-noble)
wql_1.0.1.tgz(r-4.4-emscripten)wql_1.0.1.tgz(r-4.3-emscripten)
wql.pdf |wql.html
wql/json (API)
NEWS

# Install 'wql' in R:
install.packages('wql', repos = c('https://jsta.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jsta/wql/issues

Datasets:
  • sfbay - San Francisco Bay water quality data
  • sfbayChla - San Francisco Bay water quality data
  • sfbayStns - San Francisco Bay water quality data
  • sfbayVars - San Francisco Bay water quality data

On CRAN:

water-quality

34 exports 10 stars 6.87 score 34 dependencies 3 dependents 1 mentions 166 scripts 444 downloads

Last updated 4 months agofrom:5f920a3e5a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 26 2024
R-4.5-winOKSep 26 2024
R-4.5-linuxOKSep 26 2024
R-4.4-winOKSep 26 2024
R-4.4-macOKSep 26 2024
R-4.3-winOKSep 26 2024
R-4.3-macOKSep 26 2024

Exports:date2decyeardecompTsdecyear2dateec2psseofeofNumeofPlotinterpTslayerMeanleapYearmannKenmeanSubmonthCormonthNummts2tsoxySolpettphenoAmpphenoPhaseplotplotSeasonplotTsplotTsAnomplotTsTileR2pssseaKenseaRollseasonTrendtrendHomogts2dftsMaketsSubwqDatayears

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigplyrR6RColorBrewerRcppreshape2rlangscalesstringistringrtibbleutf8vctrsviridisLitewithrzoo

wql: Exploring water quality monitoring data

Rendered fromwql-package.Rmdusingknitr::rmarkdownon Sep 26 2024.

Last update: 2022-07-29
Started: 2017-06-06

Readme and manuals

Help Manual

Help pageTopics
The main purpose of 'wql' is to explore seasonal time series through plots and nonparametric trend tests. It was created originally to examine water quality data sets (hence, "wql") but is suitable as a more general purpose set of tools for looking at annual or seasonal time series.wql-package wql
date2decyeardate2decyear
Class "DateTime"DateTime-class
Decompose a time seriesdecompTs
decyear2datedecyear2date
Convert conductivity to salinityec2pss
Empirical orthogonal function analysiseof
Plot EOF percent varianceeofNum
Plot EOF analysis resultseofPlot
Interpolate or substitute missing time series valuesinterpTs
layerMeanlayerMean
leapYearleapYear
Mann-Kendall trend test and the Sen slopemannKen
meanSubmeanSub
monthCormonthCor
monthNummonthNum
Converts matrix to vector time series for various analysesmts2ts
Dissolved oxygen at saturationoxySol
Nonparametric Change-Point Detectionpett
Phenological amplitudephenoAmp phenoAmp,ts-method phenoAmp,zoo-method
Methods for Function phenoAmpphenoAmp-methods
Phenological phasephenoPhase phenoPhase,ts-method phenoPhase,zoo-method
Methods for Function phenoPhasephenoPhase-methods
Plots seasonal patterns for a time seriesplotSeason
Time series plotplotTs
Anomaly plot of time seriesplotTsAnom
Image plot of monthly time seriesplotTsTile
R2pssR2pss
Seasonal and Regional Kendall trend testseaKen
Rolling Seasonal Kendall trend testseaRoll
Determine seasonal trendsseasonTrend
San Francisco Bay water quality datasfbay sfbayChla sfbayStns sfbayVars
Trend homogeneity testtrendHomog
Convert time series to data framets2df
Create time series from water quality datatsMake tsMake,WqData-method
Methods for Function tsMaketsMake-methods
tsSubtsSub
Construct an object of class "WqData"wqData
Class WqDataplot,WqData-method summary,WqData-method WqData-class [,WqData-method
Miscellaneous utility functionsyears
Class "zoo"zoo-class