Changes in version 1.0.3 (2025-09-02) - Minor ggplot fix Changes in version 1.0.2 (2025-01-23) - Correct citation information - Minor styling fixes Changes in version 1.0.1 (2024-05-28) - CRAN maintenence release Changes in version 1.0.0 (2022-08-10) - Update maintainer name and contact info - Bump version to signify stable functioning - Link rot fixes Changes in version 0.4.9 (2017-07-04) - Fork and rebrand wq to wql - Added roxygen documentation Changes in version 0.4.8 - eof: Shift id to row name in output. - eofPlot: Fix for non-numeric row names in original data. - mannKen: Use different definition of relative sen slope. - pett: Add change.size. Get actual change.time for zoo objects. - phenoAmp: Change to more versatile output statistics. Change argument name. - phenoPhase: Change argument name. - seaKen: Use different definition of relative sen slope. - trendHomog: Ignore seasons with insufficient data. Changes in version 0.4.7 - Add back html vignette. - Fix global variable notes. - eof: Calculation method changed. - eofNum: Remove ruleN-based colouring. - eofPlot: Remove Monte Carlo lines. - plotTsTile: Default to median instead of mean. - ruleN: Remove. Changes in version 0.4.6 - decompTs: Remove startyr and endyr. Add median as default centering method. - mannKen: Remove "tau" argument. Use median instead of mean for relative. Add exact p-values. Allow matrix and data.frame. Change plot. - pett.R: Add new function with plot for Pettitt test. - plotTs: Remove plot.order argument. Improve legend. - plotTsAnom: Remove plot.order argument. - seaKen: Allow matrix and data.frame. Add plot. - seaRoll: Change arguments and plot. - seasonTrend: Change arguments. Remove ls trend method. Improve legend. Changes in version 0.4.5 - eofPlot.R: Fix argument to geom_hline. Changes in version 0.4.4 - wq-internal.R: Removed. - plot WqData-class: Added global variable definitions. Changes in version 0.4.3 - ammFrac: Remove. - layOut: Remove. Changes in version 0.4-1 - mannKen: Preserve station order in data matrix. - mannKen: Modify examples to be more useful. - NAMESPACE: Add importFrom("methods"). - NAMESPACE: Remove all require(zoo) from functions. - plotSeason: Enable plotting by arbitrary eras. - plotSeason: Fixed error when num.era=1. - vignette: Remove unnecessary commands from preamble. - wqData: Require locus to be length 3. - WqData-class: Change tz="UTC" default in as.Date for summary. Changes in version 0.3-11 - [: method now exists for WqData objects. - plotTsTile: has additional options and a corrected help file. - subset, transform: no longer used within code. - wqData: handles collision between locus and wq variables with same name. - minor bug fixes. Changes in version 0.3-10 - Vignette (re-)included. - Minor changes in plotting functions. Changes in version 0.3-8 - Updated for ggplot2 0.9.2. Changes in version 0.3-7 - Minor changes to manual. Changes in version 0.3-6 - Minor changes to code, with no changes in behaviour. Changes in version 0.3-5 - Addresses issues introduced with version 0.9 of ggplot2. - Uses reshape2 instead of reshape. - plotTsAnom and seasonTrend: minor plotting changes. Changes in version 0.3-4 - date2decyear: Converts dates to numeric years. - interpTs: More options for replacing NAs. - plotTs: Time series line plot plus isolated points - plotTsAnom: Now works for matrix time series. - theme_wq: Simplified version of theme_grey in package "ggplot2". - tsMake: No longer excruciatingly slow when layer = "max.depths" Changes in version 0.3-3 - plotTsAnom: time series anomaly plot. - tsMake: Now aggregates depths (and days) by quantiles as well as means. - plotSeason: Fixed problem with missing data treatment. - tsSub: Fixed problem with incorrect starting month. Changes in version 0.3-1 - plot method for class "WqData": Boxplots instead of stripcharts. Also fixed behaviour when less than 10 unique variables. - plotSeason: Changed "by.month" option to standardized anomalies. - tsMake: Added option to create series for "bottom" of water column. - Version requirement is R 10.0. - Vignette file size fixed so it can be downloaded from HTML help. Changes in version 0.3 - All plot functions now produce objects of class "ggplot". - layOut: Lays out graphs of class ggplot. - mannKen: Added mts and plot options. - meanSub: Utility function to average subsets. - mts2ts: Prepare spatial time series for further analysis. - plotSeason: Added another way of plotting. - seaRoll: Plotting is an additional option. - trendHomog: Test for homogeneity of seasonal trends. - tsSub: Utility function to drop seasons in a ts. - plotEof: Changed to eofPlot. Changes in version 0.2-9 - phenoPhase: Integration defaults can now be changed, if necessary. - plotSeason: Added smoother when type='by.month'. - seasonTrend: Changed appearance and some options. - plotSeason: Fixed problem when type='by.month'. - plotTsTile: Now plots correct colours when four=FALSE. - tsMake: Fixed problem when layer of class "numeric". Changes in version 0.2-8 - wqData: Changed "narrow" to "long". - plotSeas: Changed to plotSeason. - ammFrac: New function for un-ionized ammonium. - plotSeason: Added option to plot individual months for entire record. - seasonTrend: New function for time series trends by season. - tsMake: Now allows for more ways of specifying depths. - mannKen, seaKen: Now gives correct sign when trend given as %. - phenoAmp: Fixed problem when subsetting months leaves no data for year. - phenoPhase: Fixed problem when subsetting months and x is a "zoo" object. - plotSeason: Now handles num = 1. - tsMake: Fixed problem when focus consisted of a single variable or site. Changes in version 0.2-5 - interpTs: Option to fill with long-term mean or median. - plotSeas: Option to choose number of intervals. - WqData plot method: Option to choose variables. - phenoPhase: Fixed problem where max.time month number given relative to subset rather than whole year - plotTsTile: More useful error message when not enough data. - seaRoll: Fixed problem with frequencies other than 12. - tsMake: Remove need to specify layer if no depth info. - WqData subset method: Removed because of strategy that WqData objects should not be changed. - wqData: Argument value "narrow" changed to more conventional "long". - wqData: Now requires time.format to be specified. - wqData: Now ensures variable is a factor when type = "long".